Day 10 - Gene Set Enrichment and Pathways

Fundamentals of gene set enrichment testing and gene sets analysis tools.

Topics

Gene set representation of biological knowledge

  • Gene Ontology
  • Gene set databases

Gene set overrepresentation and enrichment testing

Gene Set Enrichment Analysis

Bioconductor annotation packages and ENSEMBL

Materials

Notes Exercises Solutions

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Logistics

Date 26 August 2016

Time 10 am to 12 pm (Instruction) / 1 pm to 2 pm (Intro to Exercises and Q&A) / 4 pm to 5 pm (Q&A)

Room Countway 403

Teaching Staff

Peter Kharchenko (Course Director)

Adam Brown (Teaching Assistant)