Tutorials

Please refer to the following vignettes to help you get started with using scde:

• Single cell differential expression analysis
• Pathway and gene set overdispersion analysis
• Experimental use of pagoda
• Preparing custom gene sets for pagoda

Additional Resources

Additional tutorials featuring scde and pagoda

• Single-Cell Workshop 2015
• Single-Cell Workshop 2014

Browse pagoda apps for public datasets

• All datasets analyzed in "Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis" (Fan J, Salathia N, Liu R, Kaeser G, Yung Y, Herman J, Kaper F, Fan JB, Zhang K, Chun J, and Kharchenko PV, Nature Methods, doi:10.1038/nmeth.3734)