2D Pipeline API

Cell Neighbor Detection & Graph Construction (2D)

interscellar.api.wrapper_2d.find_cell_neighbors_2d(polygon_json_path: str, metadata_csv_path: str, max_distance_um: float = 1.0, pixel_size_um: float = 0.1085, centroid_prefilter_radius_um: float = 75.0, cell_id: str = 'cell_id', cell_type: str = 'subclass', centroid_x: str = 'X', centroid_y: str = 'Y', db_path: str | None = None, output_csv: str | None = None, output_anndata: str | None = None, n_jobs: int = 1, return_connection: bool = False, save_surfaces_pickle: str | None = None, load_surfaces_pickle: str | None = None, save_graph_state_pickle: str | None = None) → Tuple[DataFrame | None, object | None, object | None]