HuBMAP examples

These charts read the metadata endpoints of the HuBMAP Data Portal, to show how the grammar works with a project like HuBMAP. They follow a Jupyter notebook that draws a similar set with Matplotlib.

Datasets

The following section explores metadata from HuBMAP datasets.

Datasets by Organ

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Datasets by Assay and Organ

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Datasets Heatmap by Organ and Assay

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Donors

The following section explores metadata from HuBMAP donors.

Table

This is a plain table of raw metadata for every available donor, with no transformations applied. All that is provided is the source.

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Visual Table

This is a table that visualizes the available donor metadata.

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Donors by Sex

This simple bar chart visualization uses the above metadata to compare the number of available donors of each sex via a rollup operation.

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Donors by Race and Sex

This is a slightly more complex stacked bar chart showing the number of available donors of each race, with each bar divided to show the ratio of sexes within that group.

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Donors by Age Group and Sex

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Samples

The following section explores metadata from HuBMAP samples.

Samples by Organ

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